rs36319161 SNP Detail

Summary

• ID
  rs36319161
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87656007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC GTAGGGCATA GATGCGTGGA
  W
  TCTAGGGCAG TGCAGCTAGG GCCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51576155	NES14670760	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T		A	T	A		T
ss135467975	ENSMUSSNP3751195	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320835325	CHEV_3_87552622	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36319161					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51576155	NES14670760	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87656007 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	75 bp upstream
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	within coordinates
Rr579536	regulatory region 579536	294 bp proximal
Rr579537	regulatory region 579537	502 bp proximal
Tssr33946	transcription start site region 33946	145 bp upstream
Tssr33947	transcription start site region 33947	132 bp upstream
Tssr33948	transcription start site region 33948	102 bp upstream
Tssr33949	transcription start site region 33949	85 bp upstream
Tssr33950	transcription start site region 33950	70 bp upstream