rs36317486 SNP Detail

Summary

• ID
  rs36317486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143657349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAATCTTT AAAAGCTCTC
  TTCCCTCAAA CATTTTATTT GTTCTTAATA TGCAGTATGA GGGGGCGGGG GTAGTTAGGC
  ATATTTGTAT ATCGTAAAAG GAAGAATATA AAACCACCAA AATGACAATG TTCACATGTA
  AACGAATCTG TAAGTCAAAT GATGTTCAGC GGTGATGCTT TAGGAACTGT TAGGTCCTCA
  Y
  TGTACCTCAA GAATTCTAAA CAATAACTAA GAAGAGGAGG AAGAGAAGAG AAAGGAAAAA
  GAAAGAAGCA AGCAAGCAAA GAAAGAAAAA GACTAAGATA GGACACCTAT ACCTGCCCTT
  CATGTACTTT AATCTTTCAA TGCTGCCATC TTGGAATTCT TAACAGTTTT CAAACAAGGT
  ACTATATTTC CACACTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658661	NES14647093	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T		C	T	C	T
ss136027396	ENSMUSSNP3738819	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36317486					SNP	T	T	T	T	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658661	NES14647093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143657349 () rs orientation: forward

Symbol	Name	Function Class
Rr586569	regulatory region 586569	1509 bp distal