rs36313957 SNP Detail

Summary

• ID
  rs36313957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:80835320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCAGTT AATTTTACCT
  TTTATACTAA ATACAAAGAA TGTGAATTCG AGTACAGCTG AAGAGAAATC AGAACAAGCA
  TGAAACTCAA ATAGCCATCA TAACCTAGCC AAGTCCAGCA GAGAGAGTTT GTGTGTTGAC
  TGCACATGAG ATGAGAGAAA CAGGCACCGT GAATAGAAAG GTCACTCATG GTGAGCACTT
  Y
  CTCTGGATGA CTTCCATCCT GAGGACGTAG AGGCAGCTGA AGTCTCCCAG TGTTTATCAG
  AAAGGAGTGC AACCACAATG CATAGAGTAA ATGTCTAAAG TAAGGGTCCC ATACTTGAGT
  GCTGTTGGCC CTTTGAAATA ACTTGCACCC CACCCTGTCT CAAAGAGGCA ACAAAGTTTG
  GCATCAGTGA TCTGCTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51717760	NES14803269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36313957					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51717760	NES14803269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:80835320 () rs orientation: forward

Symbol	Name	Function Class
Gm66997	predicted gene, 66997	within coordinates
Rr632540	regulatory region 632540	866 bp distal