rs36312910 SNP Detail

Summary

• ID
  rs36312910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130739087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAATCAT TGTGGATTGA
  TTGGCAGAGT CCTCAGATGA GAACACTGAC AATCCAGGTT GACTGTAAAA GAGAACAATA
  ATTTCAAGTG TGAAGGAAAC GTTCCAGATT AAAAAAACAA AAAAAACAAA ACAAAACAAA
  CAAACAAAAA CACAGTGTAT GCTGTCTAGA TCCTTATAAA CATATTTCCT CTTCATGAAG
  R
  CAACTGTCAC ACTTCCTTCC CTGAAGTGTA TGCTGTTAAG CTTATTTACT TCCTGGTACT
  CAGAATAGGT TTTTCTCCAG CAGTCTGGGA AGGCAGCCGG GTGGGTGGGT GGCTTTGGGG
  CCCACACTGG ACCAGCATCT GAGTCGCAAC AAATCCCATA TTGTCCAGAC CCTAATGAAA
  TTGCTTCTGG CGTCGCCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51636350	NES14654930	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36312910					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51636350	NES14654930	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130739087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13830	CpG island 13830	471 bp proximal
Gm65596	predicted gene, 65596	313 bp downstream
Rr585243	regulatory region 585243	1850 bp distal
Rr585244	regulatory region 585244	within coordinates
Rr585245	regulatory region 585245	1944 bp proximal
Tssr35670	transcription start site region 35670	1877 bp downstream