rs36310500 SNP Detail

Summary

• ID
  rs36310500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108283486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCGCTTTT GTAGCTCTTA GCATTTTCTC TTCCTGTCCA
  CAATCCAGAC AGTCCAGGCT CGAGTTGGGG TGTGTGTCCC TGTCCCTTAT CCGGCTGCTC
  Y
  GAGGAAGAGC CTCCCTGGCC TTTTGCTTTC ATTTGCCTTA TATGGTCAGC TGTGGAGTTC
  GTTATTCCTG GAAAGGGCCT TTTCACTGTT TCAAGCACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51818077	NES14771936	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C	C	C	C	C
ss133499162	ENSMUSSNP6838621	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36310500					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51818077	NES14771936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108283486 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636071	regulatory region 636071	885 bp distal
Rr636072	regulatory region 636072	within coordinates
Rr636073	regulatory region 636073	455 bp proximal