rs36302480 SNP Detail

Summary

• ID
  rs36302480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143448553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGGGCA TACATTTGTG
  TGCACAATTA TTCAGTGAGT GACTGATTTG AGCATCTGTG CAGATCAAAT GCTACCGGCA
  CCTGGATGTA GACTCCTCCC TGTTTTGTGC CCTCTGTTCA TTGCTTCTCT GTCTTTGTGG
  CTCTTTTCCT CCCTTAACTC TTATCCTTCT CAGCTCCAAC AGTCACAACA GTCTCCAAGA
  Y
  GGATGAGAAA AATAAGATAT AAAAAGAAAT CTCTTAAAAA AAAAGTTTAA TAAGGCAAAT
  CAGTCACGGA ACAGAAGTGA AAGTTAACGT CATGGCTGTA GTGGTATGCC CATGCTATCA
  TCTGTAATCT CTAGCCATAG TTCACAGTGA GTGACCCCCT CCATGTGCGA GGACAGTGCT
  GGATCACCCT GTAGATGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51661397	NES14645635	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36302480					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661397	NES14645635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143448553 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	486 bp upstream
Gm42705	predicted gene 42705	585 bp upstream
Rr586558	regulatory region 586558	95 bp proximal
Rr586559	regulatory region 586559	184 bp proximal
Rr586560	regulatory region 586560	596 bp proximal