rs36300036 SNP Detail

Summary

• ID
  rs36300036
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:123157288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGGTTC CTTCCCCAGT
  AAACAGCAAC CAACCTCATT GGCTTGTGGA TTTGTTGGGT TGGTATTTGC AAGTTATAAT
  ACCTGCCTAG GTATCTAGGG AACTTGTTTA CGCTAGTTGC CATGGTGTGG GGGTCTGCTT
  TCTGAAGGAT GGAAGGATTG TGATTCCAAT GGAGCCTTGA GGATGGTGGA AGTGAGGTCC
  K
  GAGGAGAGCC TACCAAACTG GCAAGAACCT TCACAGTCAG TCGTGGGGTC TCTAGGGAAA
  GAGAGGGGGT CTGGTGTGAC TGGCATCATG CCACACACCA AGTCACTCTG GTGGCTCACA
  CCTCTAATCC CCGGCACTCG GGAGGCAAAG GCAAGCGGCT CTCTGTGAGT CTGAGACCCT
  GCCCTAAACA AAAGCCCTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss51195011	NES13812645	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs36300036					SNP	T	T	T	T	T	G	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195011	NES13812645	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123157288 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Orai1	ORAI calcium release-activated calcium modulator 1			Intron
				Noncoding-Transcript-Variant
Rr620049	regulatory region 620049			1352 bp distal
Rr620050	regulatory region 620050			131 bp proximal
Tssr53187	transcription start site region 53187			1650 bp upstream
Tssr53188	transcription start site region 53188			276 bp upstream
Tssr53189	transcription start site region 53189			248 bp upstream