rs36299848 SNP Detail

Summary

• ID
  rs36299848
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:16999454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTAGAT AGGCACCAAG
  CTTTACTTGA TAGGCATCTT TCAATTACTC ACAGCCTGTA AAACAGCCAC GACTCAATAG
  TGGCTTGACA GAGCCAATCC CCGGTTAACA AGCGTTAACA GTGACCTAAG GATAAAAGAT
  TCTACCACGG TCTAGGACCA TTTACCTGAC TCTACACTAG CAACTTAGAG CAAAATAAGC
  K
  TCTACTTGAG GTACAATGCA AATCTAGACA GTGAGTTTCA AAGGACAGCT TCTAACAAGG
  GATACTCACT AACGCTAACC AAGAGAGGGC AGTGTTTTGA GGCTTGCATA GGGTTATTGG
  TTTTTATCCG GTTAAGAACG AGACTCATCC CGATCAATAC TGAGAGGTTG TCATAACAGA
  CCTTCAGAAT ACATGCAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51242921	NES13805250	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36299848					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242921	NES13805250	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:16999454 () rs orientation: forward

Symbol	Name	Function Class
Gm67154	predicted gene, 67154	within coordinates
Rr626743	regulatory region 626743	41 bp proximal
Rr626744	regulatory region 626744	75 bp proximal