rs36299519 SNP Detail

Summary

• ID
  rs36299519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101954813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTTCTC TGGTTGCTAC
  ATACCACTGT CCTTAATGGC TGTTCCGTTA TTAACCCTTC AGCCTTCAAG AGTGTAGCCT
  TTCCCTTGAG CTGAGCTGTT TGAGCAGTCC TTCATCTCCC TCCATCACCT GTCTTCCCTG
  TCTGTCCTTA ATGCCTTCAT GATATTCAGT GGTCACCTAC TTACTCCATG AGTGGAACAG
  Y
  GCCACATGAG GTCTTTCCCA GTCCGCCTAA AAGACGGAAG GAGACCTTCT GTGTAGGCAT
  GGGTGATTCC TTCTGCTCTG AAAATGGCAC TTCAGCTTTC TCTTGGCTAA CAACCATAGG
  AAACATTGTT GTTTAGAATG TCTCCTTGCA GGTGGTCCAG AACCTCACAG AGTTGCTGTC
  TCATAATGCC ATGTAACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51588965	NES14670378	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	T		C
ss135552934	ENSMUSSNP2214765	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320854059	CHEV_3_101851420	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36299519					SNP	C	C	C	C	C	C	T	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51588965	NES14670378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101954813 () rs orientation: forward

Symbol	Name	Function Class
Rr375477	regulatory region 375477	1556 bp upstream
Rr407227	regulatory region 407227	1340 bp proximal
Rr582166	regulatory region 582166	1695 bp proximal