rs36298627 SNP Detail

Summary

• ID
  rs36298627
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31089599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGACCA ACTGAGCCTG
  TTTTCTTCTT GATAATACTG CTAGCCTCTA AAGTGAGCCA GCATCTTAAG ATATGAGAGG
  GCAGAAATGA AGCAATCAGA CATAACAAAC TATATCCCCC ATTTCCACAT GACTTGGCAG
  GGGCGGGGCG GGGGGTGGGG GGAGGAAGCT TGGCGCTTGC CAGGTATTGA GGATCTAACA
  W
  TGTTAACAAG AAAAAACATG CAGAAGAGAC TGACCAAAGA AACAAAAAAA AAAACAACTT
  ACTCCGCTTC CCAGCTGCAA GCAGGTTGTG TTCTGGCTGC CCGGCAACTG CTTCTCCTCA
  AGGCCCTGGT TTCATTACAA AAGCTGTGCC TGGACTCATA CAGCCAGGTT TACTGTGGAA
  CAACACCAAA GCGCCTGCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260179	NES13793972	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36298627					SNP	T	T	T	T	T	T	A	T	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260179	NES13793972	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31089599 () rs orientation: forward

Symbol	Name	Function Class
5330406M23Rik	RIKEN cDNA 5330406M23 gene	1744 bp upstream
Gm56937	predicted gene, 56937	1071 bp upstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	within coordinates
Rr627886	regulatory region 627886	376 bp proximal
Rr627887	regulatory region 627887	912 bp proximal
Rr627888	regulatory region 627888	1082 bp proximal
Rr627889	regulatory region 627889	1724 bp proximal
Tssr55448	transcription start site region 55448	1106 bp upstream
Tssr60154	transcription start site region 60154	809 bp downstream