rs36297546 SNP Detail

Summary

• ID
  rs36297546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127505891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAA CATCTCAAAA ATAAACTACA
  Y
  CTATAAGGAA CTCACTGATT GGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
ss50947331	NES14150891	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
rs36297546					SNP	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947331	NES14150891	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127505891 () rs orientation: forward

Symbol	Name	Function Class
1700012D01Rik	RIKEN cDNA 1700012D01 gene	1171 bp downstream
Rr369095	regulatory region 369095	1020 bp downstream
Rr440993	regulatory region 440993	259 bp proximal
Rr440994	regulatory region 440994	401 bp proximal
Rr440995	regulatory region 440995	1336 bp proximal
Rr440996	regulatory region 440996	1421 bp proximal
Rr440997	regulatory region 440997	1638 bp proximal
Tssr96241	transcription start site region 96241	1613 bp downstream
Tssr99819	transcription start site region 99819	1433 bp upstream
Tssr99820	transcription start site region 99820	1139 bp upstream