rs36294665 SNP Detail

Summary

• ID
  rs36294665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:30778305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACTTTA AAGAGCTTCT
  TTGGGAAAAA CCCAATTTGA AACAGCTTCA AATGGCCAAA GACTAATTAA ACGCTATCAG
  ATAAAAATAC ATGAATGTAT AATGAAATTT TGACAATAAA TCAATTTGTC ATCAGTGAAC
  CAACTCTTTA ATATGAAAAT GAGACTTTTC TGTGTGCTGT GCTGAGATTG GCTGAGTATC
  Y
  GGTACTGGGA ATACAATCAT CAAATATATG TGCTGATGGT ACTGGAAGAC AGGGGTGGGG
  AAGGAGAGGG GGTGGTCTGA GAAGTAACTG GGTCTGATGA GCTGTGGCCT CAGCAGGATG
  TCCCTCGCTC TGGCTTTGTG ATGGGTGGAT GACACACCCA GCTCCTTTAA ATCACACCGC
  CTCTAGAAGA ATGGGTGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51448612	NES14439942	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36294665					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51448612	NES14439942	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30778305 () rs orientation: forward

Symbol	Name	Function Class
Rr374761	regulatory region 374761	within coordinates
Rr574818	regulatory region 574818	1497 bp distal
Rr574819	regulatory region 574819	1557 bp proximal