rs36294509 SNP Detail

Summary

• ID
  rs36294509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130741245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCACAGCG TAGGGCAGAC ACAGGGCCAA GACACCTGGA
  CTCCCCTCCC TTGTAAACAC AACTACCACC TGTAGGCTAG CTCCAGAAGA AATGTTAGTG
  R
  ATGTCCTGTG GACAGAGACA ACCAAAGTGG TTCTCATCAC TCTCTCACTG TGTAGCTAGC
  TCATGAACAT GTTAGGTTTA ATCTTACAAT TCTTAATGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51636320	NES14654860	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G	A	G	A	G	G	G	G	A
ss135902625	ENSMUSSNP2594436	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36294509					SNP	G	G	G	G	G	G	A	G	A	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51636320	NES14654860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130741245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13830	CpG island 13830	1223 bp distal
Gm65596	predicted gene, 65596	204 bp upstream
Rr585244	regulatory region 585244	215 bp distal
Rr585245	regulatory region 585245	within coordinates
Tssr35670	transcription start site region 35670	257 bp upstream