rs36290413 SNP Detail

Summary

• ID
  rs36290413
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:45333176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGGAGAAAT GAAGAGAATG AAAGTTTTAT GCTGCAGAAC
  GGCTCCGTGT TTTTCCAGCA AAAATTTTTC TCGCTGTCTT TAACCCCGCT CGCGTTTGCC
  W
  GCCGTTGATA TCAAGAGGCA TGTTCAGTGG TGCCGGCAGC ATCTCCTCTA CCTTCTTTTC
  CTCTTCATCT TCCTCCTTCT CCTCTTCTTC CTCCTCCACA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss51513703	NES14697473	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs36290413					SNP	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51513703	NES14697473	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45333176 () rs orientation: forward

Symbol	Name	Function Class
2610316D01Rik	RIKEN cDNA 2610316D01 gene	481 bp upstream
Cpgi13122	CpG island 13122	1120 bp distal
Cpgi13123	CpG island 13123	127 bp distal
Cpgi13124	CpG island 13124	598 bp proximal
Pcdh10	protocadherin 10	mRNA-UTR
Rr576052	regulatory region 576052	304 bp distal
Rr576053	regulatory region 576053	367 bp distal
Rr576054	regulatory region 576054	within coordinates
Rr576055	regulatory region 576055	74 bp proximal
Tssr29009	transcription start site region 29009	328 bp downstream
Tssr33088	transcription start site region 33088	493 bp upstream
Tssr33089	transcription start site region 33089	479 bp upstream