rs36288886 SNP Detail

Summary

• ID
  rs36288886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135367119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTGTGC CAGAAAAAAA
  ATGATCTTCC ATTGTAAAAA GAAAATTAAA TCACAGCAAA ATGACACAGA CCTATCAGCT
  GTCCCTTGTT AGAGAGTTCC CAACACAGGG TTAGAAATAC TAATACGTTG AGATTTTAAG
  AAGTTGAGAA GATTGAAAAA AAATCCACAT GAAAATTACA AGCAAACACT GTCACAGATA
  R
  CCTTTCTAGT CCTTTAAAAT CTGAACAAAA TGTCCCATCC ATCTTGGACT ATAAAAACAG
  GACAACGCAC TGAAACAGAG CCGGAGAGCT AGTGCAAGCA AGGAGCCATT ACAACAGGAA
  AAGAATGCAT CTTCCATGCA ATTCTGAAGG ATTCTCTAAC ACTATGGAAA AGAAGATTCC
  CGAAGCGCAA TGATATGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss51649283	NES14653891	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs36288886					SNP	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649283	NES14653891	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135367119 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	841 bp proximal
Tssr35804	transcription start site region 35804	1936 bp downstream