rs36288456 SNP Detail

Summary

• ID
  rs36288456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102027790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAAGGAC CAATCCTATC
  CTCTCAAAGG CCCATAACGG GGGGGGGGGG TGGGGGGGTG GTGGGGGGGC AGTATTCTCA
  GTGTGTAGAG GGAATAATCA AAGTAGGGAG TGACAGATGC ATTCAACTGA AGTCACATAG
  TCAGCGACTG GTAAGACTGG ATGTACCTGA GTCCTGACTG ACATGAAAGA CTATTCTGGA
  Y
  AGCTGTGCTC AGAGACGGAA GCTTCAGGTA GCGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGG CTAGAGTTTG CTTATGCAGT AGATGTTAGC TAGCTATAGG AACCGCTGTC
  AGTAAAAAGA CATCTAGACA CAGGAGGAGA GGCCCAGACA GGTTATTAGG CAAAGGTGAG
  TGCAGAAGCC CAAATTGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51587963	NES14668919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	C	C	T		T
ss320854484	CHEV_3_101924397	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36288456					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51587963	NES14668919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102027790 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	603 bp proximal
Rr582182	regulatory region 582182	608 bp proximal
Rr582183	regulatory region 582183	1687 bp proximal
Rr582184	regulatory region 582184	1705 bp proximal
Rr582185	regulatory region 582185	1770 bp proximal