rs36287533 SNP Detail

Summary

• ID
  rs36287533
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:41524461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGAGCT GTGCTTAAGA
  GTTCTCCCAT ACCTCCCTCA CAACCTAGCA TCGCTCATCC CCATCCCTGC TGCTAGATTT
  TTAAGGTCAC TCTGACAGTG TCTTATAACT TTCCCAGCAC CATCAGAAAG ACAGTGTGAG
  GACTATAAGA GGAGAGTGCT TACACCATCT GACATGCATG TGTCTGTGGC CTTTACATTC
  K
  GCTTTAAGTT TTGTTGTTGG GTGTTCAATG TCCCCCAAAG TGGCTTTCTT TCACCCAATT
  TTCTCCCTCT CCTTTCTTTC AGACTGTGGA ATCACTTCAG GTGAGTAGAT CTTCCGACTT
  TCTCTACGTC TTCTGTGGTC TTGGCTTTGA AAACAGGACA CAAATATCCT ATAGACATGA
  GGGTCGGGGC TGCCCAGAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51624273	NES14839700	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36287533					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624273	NES14839700	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41524461 () rs orientation: forward

Symbol	Name	Function Class
Gm68268	predicted gene, 68268	816 bp downstream
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	Intron
Tssr1822	transcription start site region 1822	6 bp downstream
Tssr55948	transcription start site region 55948	1432 bp downstream
Tssr55949	transcription start site region 55949	1221 bp downstream
Tssr55950	transcription start site region 55950	950 bp downstream
Tssr55951	transcription start site region 55951	219 bp downstream
Tssr55952	transcription start site region 55952	149 bp downstream
Tssr55953	transcription start site region 55953	142 bp downstream
Tssr55954	transcription start site region 55954	92 bp downstream
Tssr55955	transcription start site region 55955	63 bp downstream
Tssr55956	transcription start site region 55956	19 bp downstream
Tssr55957	transcription start site region 55957	255 bp upstream