rs36286561 SNP Detail

Summary

• ID
  rs36286561
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102027972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAGACT ATTCTGGATA
  GCTGTGCTCA GAGACGGAAG CTTCAGGTAG CGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGGC TAGAGTTTGC TTATGCAGTA GATGTTAGCT AGCTATAGGA ACCGCTGTCA
  GTAAAAAGAC ATCTAGACAC AGGAGGAGAG GCCCAGACAG GTTATTAGGC AAAGGTGAGT
  K
  CAGAAGCCCA AATTGGATTC ATCATGGCTG CTGGTTTGCT GATGCAGGCA GGGGTGACTA
  AGAGATTGTA GGTTAAGAGC TTTGAGGGCT GGGGATATAG CTCAGTTGTT ATAGCACTTG
  CCCAACATGA ACCAAGCCCT AGGTTTGATC TCCAACACTG CATAAACAGT ATGCTGGAGG
  CCATCCTCGG CTACATAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51587957	NES14668921	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36286561					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51587957	NES14668921	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102027972 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	421 bp proximal
Rr582182	regulatory region 582182	426 bp proximal
Rr582183	regulatory region 582183	1505 bp proximal
Rr582184	regulatory region 582184	1523 bp proximal
Rr582185	regulatory region 582185	1588 bp proximal