rs36285539 SNP Detail

Summary

• ID
  rs36285539
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143448669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTGCTT CTCTGTCTTT
  GTGGCTCTTT TCCTCCCTTA ACTCTTATCC TTCTCAGCTC CAACAGTCAC AACAGTCTCC
  AAGATGGATG AGAAAAATAA GATATAAAAA GAAATCTCTT AAAAAAAAAG TTTAATAAGG
  CAAATCAGTC ACGGAACAGA AGTGAAAGTT AACGTCATGG CTGTAGTGGT ATGCCCATGC
  W
  ATCATCTGTA ATCTCTAGCC ATAGTTCACA GTGAGTGACC CCCTCCATGT GCGAGGACAG
  TGCTGGATCA CCCTGTAGAT GGAGCTAACT GCTGCTGTCC CCTGGATCAG CACAGTTGCC
  CTGTGTGCAG CCGTCCTCCC AAAGTCTGGC AGCGCCATCA GGAAGGTCAA TCTGCCCGAA
  TCTGACTCTT TGAGTAAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51661394	NES14645637	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36285539					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51661394	NES14645637	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143448669 () rs orientation: forward

Symbol	Name	Function Class
Gm33867	predicted gene, 33867	370 bp upstream
Gm42705	predicted gene 42705	469 bp upstream
Rr586558	regulatory region 586558	within coordinates
Rr586559	regulatory region 586559	68 bp proximal
Rr586560	regulatory region 586560	480 bp proximal