rs36282245 SNP Detail

Summary

• ID
  rs36282245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116646183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAATGA TTTAGTTGTT
  GTCATCAGCT CCACGGCCTT CAGTGAGTCA CCTGGCTTCC CTGGATGTCA AACACGTCCT
  CCCTGAGTGG TACCTCATAC TCCATCCCCA CTGAGCTCCA GAATGTCCCA CAGACGCCCC
  CCTCCGCCCC CATTTGTTTA GCTCGCCTAG CAGAAGTGAA GATATTCTAG AGATACGTTG
  Y
  GTCTTTCAAT CTGCCTATGG GGCTATTTAA ACAAATGGGA ATTTCCCCAG AAAGCACATG
  CTGGGAGAAG GAAAAGGGGA AGCAGGGGGG AATGCATCTC TCAGAGATTT CACAACCTTA
  CAGGGCCAAA CTGAAGCCCA GATAAGGCTG GGTCAAAGGA GGGCAGGGCC ACACCTTAAG
  AAGGGCATAG CCCTGACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51859262	NES14882434	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36282245					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859262	NES14882434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116646183 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	116 bp distal
Rr637229	regulatory region 637229	39 bp distal
Rr637230	regulatory region 637230	762 bp proximal
Rr637231	regulatory region 637231	1038 bp proximal
Tssr58383	transcription start site region 58383	163 bp upstream
Tssr58384	transcription start site region 58384	201 bp upstream
Tssr62604	transcription start site region 62604	831 bp upstream
Tssr62605	transcription start site region 62605	807 bp upstream