rs36281536 SNP Detail

Summary

• ID
  rs36281536
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87656720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAGGCAG ACGCTAATCT
  AGCAACAGGG GAAAGCACAT CGGAGTGCAG CTTGAGCTGT GCATGTGACC CTGAGCCGTT
  AAACCCAGCA CTCAAGAGGC AGAGGCAAGC AGAGCTCTTG AGTTCCAGGC CAGCCAGGAC
  TACATAGTGA GACAGAGTCT CAAAAACAAA ACAAAATGCA ACAATCCCAT CTTCTTGCCT
  K
  GTACCACTTC TGCCTTCTGT GGGTACGTGG AGAAGAGAGT AGCTATGAAG CAGATGTGGG
  GTGGGTGTTC TGTGGAATAT GTGAAGGGCA AGCAGGACTC AACGGGTAAC TTAGGAAGGC
  TGAACTTAGA TGTGCCAATT CCTGGGCTGG GAAGTAGGGT GGCAGACAGC CTTCATTCTG
  GGAAAGAATG AAGCGAGACG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51576146	NES14670649	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36281536					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51576146	NES14670649	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87656720 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	788 bp upstream
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	581 bp distal
Rr579536	regulatory region 579536	within coordinates
Rr579537	regulatory region 579537	190 bp distal
Tssr33946	transcription start site region 33946	858 bp upstream
Tssr33947	transcription start site region 33947	845 bp upstream
Tssr33948	transcription start site region 33948	815 bp upstream
Tssr33949	transcription start site region 33949	798 bp upstream
Tssr33950	transcription start site region 33950	783 bp upstream