rs36281445 SNP Detail

Summary

• ID
  rs36281445
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72625634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTCAGGGC CATGTGCCTT CAATCAAGCC TTCCAGGTGG
  TGTGTGCTTT TGTGCTGAGG TGGACGGAAA GGTGAGGAGG CTGTCTAAGA CAGAACCTTT
  K
  GTAACCCCTA ACTGTGCCCA CACCGGGTGT GAGGGTTAAT CTTCATTGTC AATCTGCCTG
  AATTTACAAT CACCATGGAA ACACCCTCCA GGTGTGTCTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss51694797	NES14818982	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs36281445					SNP	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51694797	NES14818982	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72625634 () rs orientation: forward

Symbol	Name	Function Class
Rr632259	regulatory region 632259	691 bp distal
Rr632260	regulatory region 632260	1143 bp distal
Rr632261	regulatory region 632261	within coordinates
Rr632262	regulatory region 632262	1408 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	Intron