About   Help   FAQ
rs36280210 SNP Detail
Summary
  • ID
    rs36280210
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:85985772 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAACACCATG GAAACTGGAT
    CCTGTTGATG GGGATGCTCT GCCGGGCTCC CAGGAGAATC TTCCAGGATG CTGTTTGGAT
    CTTTGCACTT TGATGATCAC TGGCTACTGA AGCTCCAGAG TATCACAGGT ATGATAGGAT
    TTCCCGATCA AAGTGGGCTA CCTCACAAGC TATGTGAAAC AAGAGGAGAT GACTGTAGCT
    Y
    TGTGGACTGC ATCAGGGTTG TCTCATGTGA AAGAGCATGA GGCAGCCCTC CTCCCCTCCT
    TGTACTCCAC GTCAGCCCTT CAGATTGTCC AGTCCTGCAA CCATGTTGTC CTGATGGCCA
    ATCATCCTGA CTGAGCACTA TGACCACCAA TCACAGCACA GTACACTATG AGTCTGTCTG
    GCCTAGGGAG GGTCTGCTTG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51757831 NES14802204 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C C C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36280210 SNP C C C C C C C C C C C C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51757831 NES14802204 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:85985772 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
4930553P18Rik RIKEN cDNA 4930553P18 gene within coordinates
Gm33319 predicted gene, 33319 881 bp upstream
Gm66378 predicted gene, 66378 within coordinates
Rr633312 regulatory region 633312 1254 bp proximal
Rr633313 regulatory region 633313 1350 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory