rs36279019 SNP Detail

Summary

• ID
  rs36279019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102058535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGTTCA AAAATGTCCA
  GTGAGAGTGC AACATATATT CAGACGTGGT CATACGCACA TGGTATCTGC TGACTGTAAG
  TACAGGCTAA GCCAGAACTG CCTCTCTTGG TTATAAAGCA CGGCACTAAA GTATTCAAGA
  ATAATATGGT CTCTGGCTAT CTATTTTGTA TTGTTGGACT CTACCAGATA AGGATCAAAG
  Y
  TGGGTTCAAA ATTCAGAGAT TAAAATCCTT GGTAACAAAA ACCTTTCCCT TAAAGCCTGG
  CCCAGGTATC TCTGGTCTGA TCCTTATCAG AGTTCAATTC ATACCCTGGG TGGGACAGTG
  CCTGCCATGG CTGCATCCTT GCTGGTGTCC CACACTCTGT GAACACTTAA AATTAACTTT
  AGTTAAGCAG GTCATACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51587498	NES14668411	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36279019					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51587498	NES14668411	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102058535 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582191	regulatory region 582191	913 bp distal
Rr582192	regulatory region 582192	980 bp proximal