rs36278001 SNP Detail

Summary

• ID
  rs36278001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:100062649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCTGT CACCTCCCAC
  AGGCCCTTCA CAATTTTCTC CTCATCTGGG AGGCAGTCCA GGGAAGGGGG TGAGACCCTA
  GAAGGTGAAA GAACTGAAAG AGAAAAGGAA GCTGGGTCAT TGCATGTCGA AGCTGAGCCA
  GTCCCCAGTC CTTACTTACC AGGAAGAGAA GGGCTGGCCC AGGATGAGAA GTAAGATCTT
  M
  TACTCTAGCT GCTGAAATCT GGCTCGTTCA CACTAACATA AGTTCTTTCA ACAAATGTAA
  GGGTAAGTGG TAAAGAGTTG GATGAGGGGT GGGGAGAGGA GTGAGGGGTG GGCAGAAGTC
  TGAGCCATTC CCGGTCCCCA AGAAAAGCAT GCTGGAGAGC CATGGTGCCC TAGCCAGACA
  GTCTGTGTCA GGCCCCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51789634	NES14780359	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36278001					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51789634	NES14780359	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100062649 () rs orientation: forward

Symbol	Name	Function Class
Rr635572	regulatory region 635572	172 bp proximal
Rr635573	regulatory region 635573	1157 bp proximal