rs36275624 SNP Detail

Summary

• ID
  rs36275624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113006220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCTACA AGAACATACC
  CATGAGAAAG TGTCTTTCAG ATGCTTGAGA GCATGAAGGA GATTGGAGGT GGTCTTCTGA
  GGGAAGAGGC TGCTACCAAC ACAGGCTGTA GCCAATGAGC TGTGTGCTGA TCAGCATGTA
  GAGGAGGCTA ACAGACAGTG TGGTCAGAGA GTGATGATGG GCAGTCTGGA AATCGTGGCC
  Y
  AGTGAAAGCT GAGAATGACA GTGGAAGCGA ATGGAGCACT ATGCCTGTAG TCAAGGGGAA
  TCTCAAATGG CAGAAGCTGG AGACGCCAAG CAGAAAGTCT GCTGTTCCAA TCCCACCCAA
  GAGCCATCAC TCCCCTCTCA GTGCTTCTAA CACATGCCTT CCCCATTCAG AGAATCCTTT
  GAGAAAAGGA GAATGGGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843990	NES14767056	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36275624					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843990	NES14767056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113006220 () rs orientation: forward

Symbol	Name	Function Class
Rr636436	regulatory region 636436	1380 bp distal
Rr636437	regulatory region 636437	1369 bp proximal