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rs36275624 SNP Detail
Summary
  • ID
    rs36275624
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:113006220 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCAGCTACA AGAACATACC
    CATGAGAAAG TGTCTTTCAG ATGCTTGAGA GCATGAAGGA GATTGGAGGT GGTCTTCTGA
    GGGAAGAGGC TGCTACCAAC ACAGGCTGTA GCCAATGAGC TGTGTGCTGA TCAGCATGTA
    GAGGAGGCTA ACAGACAGTG TGGTCAGAGA GTGATGATGG GCAGTCTGGA AATCGTGGCC
    Y
    AGTGAAAGCT GAGAATGACA GTGGAAGCGA ATGGAGCACT ATGCCTGTAG TCAAGGGGAA
    TCTCAAATGG CAGAAGCTGG AGACGCCAAG CAGAAAGTCT GCTGTTCCAA TCCCACCCAA
    GAGCCATCAC TCCCCTCTCA GTGCTTCTAA CACATGCCTT CCCCATTCAG AGAATCCTTT
    GAGAAAAGGA GAATGGGTAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51843990 NES14767056 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36275624 SNP C C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51843990 NES14767056 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:113006220 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr636436 regulatory region 636436 1380 bp distal
Rr636437 regulatory region 636437 1369 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory