rs36275030 SNP Detail

Summary

• ID
  rs36275030
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135813918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAGGCTG GGTGGTTCAT
  GCAAAGAGAA AACCATGTGA TCCAAACAGC AGCTGACATT TTGTCAGATG TAAATTGTGA
  CAAGAAGCAA AATGGCAATC CTTCTTTACA GTCGCTTAGT TGAAGAGGTC TGTAGTGCAG
  CTGCTGGTGA TTGCAGCCTG CCTTCGATCA TCAGTATCCC TTTGGAACAT GTACAGATTC
  S
  ATAGGTTGTG AGTTCTGAGA ATGGAAAGCC ATCACACAGA TCTGGTTTCA GGACTTTCTC
  TCCCATTAAT ACTTACATTA GCTCAGCAAG TTCCTCCCTG CCTTGGCTTC CTTAGATGTC
  AAAGAGCTTG AATATATCTC ACCTAATAGA GTTATTGTAA AAGCATAAGT GATAGCAAGT
  ACTTGGAATA AAGGTTGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51643622	NES14647571	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36275030					SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51643622	NES14647571	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135813918 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr585805	regulatory region 585805	1416 bp proximal