rs36272545 SNP Detail

Summary

• ID
  rs36272545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68544381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTCAAC TCAGCCCTAG
  GAAACAATTT AGGACTTTTC ACGTGGCTTT ATTACCACAT ATGATCACAG AACTTTCCTA
  ACAAGGAAAG GCAGGCTCCT GTGTTTCTTA TTTTTCAGAA AGGGAAATAT ATATAGGGGG
  TAAGAAGGGC ATTTCCCAAA ACTCTGCAGC AGCCATATGA ATTAGATGGG CACATGTGTA
  Y
  ACTTGTATCA CTGGACCACT TCTTAGGCTC TTTGAAAAGC CTCCCTCCTC CAAAGTAAAA
  CAATACTCTT TTCAGGGTTA AGATGGCCTC AAGCTTTCCA CTCTATGCTT AAAGAATTAC
  AAATAATATG ATTTCCAAAA TTTTCTAAAT GTAGCCAATG GTGTATTATT TTCTAAATGT
  ACAAGTGGGA TATGAATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51542414	NES14684666	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36272545					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51542414	NES14684666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68544381 () rs orientation: forward

Symbol	Name	Function Class
Gm65431	predicted gene, 65431	1406 bp downstream
Rr578052	regulatory region 578052	884 bp proximal
Rr578053	regulatory region 578053	957 bp proximal