rs36270669 SNP Detail

Summary

• ID
  rs36270669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:98081893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATACATC CACCTCCATC
  CTTTTGCAGA CTCTACTTCT CATCTGTCTT CTTGTCTGTG AATCTGACTC CTGTCATGGG
  GGCACAGCGC ACAATAGGTT CAGAGCACAG CCTGAGTGTT AGCCTTTTCA TCTCCCTTGC
  AGGACGTGTA TCAGCAAACT GTGGTTGCTT CGAGGGACAG TTAAGGTGTT GTTTGTAAGG
  Y
  TCTCAGCACC CAGCACACCT TGAGCGTGTT TCTGTTGTCA TTCAAAGCTC CTTGCAAAAG
  ATATCTTTCC TACAAGGTCC CTGTGGTGTT TGTTTGTTTG TTTGTTTTTG TTTTGTTTTG
  TTTCCACAAA TGTCATTTAT ACTCCGTATC TGTACTGTTC AGATTTCACA TATTTCACAT
  TTTATAATTA TATGACTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51380879	NES13737574	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36270669					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380879	NES13737574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98081893 () rs orientation: forward

Symbol	Name	Function Class
Rr379828	regulatory region 379828	1468 bp downstream
Rr635261	regulatory region 635261	287 bp distal
Rr635262	regulatory region 635262	354 bp proximal
Rr635263	regulatory region 635263	480 bp proximal