rs36270118 SNP Detail

Summary

• ID
  rs36270118
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123027084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGTGCAT ATTCTTTATT TAGCTTGCGA GCTATCTTCT
  TCCACTTAGC TTTCAGCTCC TTTACTTACT CTCTCCTACT TGGAGGTCAC TCAGCCATCA
  W
  GAGAAAGACA GGCTACAGGC AACGGACATT CACTTCACCT TGTGAAGAGC CTTTCCTGAA
  GGTTTGCCCA CTGAGTTGAG TTAGTGACTT AAGCTTTCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss51024668	NES13910119	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	T		A
ss135760818	ENSMUSSNP7094839	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					A
ss320918217	CHEV_3_122936353	CHEVERUD	SCREENING_POP	f	SNP								T		A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs36270118					SNP	A	A	A	A	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024668	NES13910119	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123027084 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			613 bp proximal
Rr584474	regulatory region 584474			1243 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant