rs36269539 SNP Detail

Summary

• ID
  rs36269539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135366037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGTGTG CTCATAAGAA
  CTCTGTTCTA AAACAGCCCA GAGTTATGAT AAAATACCAA AAATAATGTA ATTGAAGATA
  AATGCATGCC AATTAATTAC TATGAAAAGG ACCTAAAGGC TCAATTTATA TACCAATGAT
  ATCTGACTTG AAATTTCAAA ATAAATAAAT ATAAATGTTA TGATAAAAAA TTCCATAAGG
  R
  CGTCAGATGG CTTCTATGTC CCAGTATGAT AACCAATAGC TGTGTAATAC ACAAACATAT
  TCGACATTTT ATAGTTGTTT GAGTGAAAAT TAAGACTTGA AGCTGAAGAC AGTCTAGAAG
  AACACTTCTG TGCTCATTTG AAAATTCACT TTCTCGGCTG AAGCTTAAGC CTTATTTTGC
  ATATGTAAAT TTGAGGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss51649304	NES14653878	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs36269539					SNP	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649304	NES14653878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135366037 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	1923 bp proximal