rs36268797 SNP Detail

Summary

• ID
  rs36268797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135223735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTTACC CGCTGAGCTA
  TCTCTCCTGC CCCCTTTTAC TAACTTTTCA TTTAGCATGT ATCATAGTGT CTTCGTACAC
  ACATATCTTA TCCTTTGCCT ACTTCTCCTT TTCTCCCCTG AAATTCCAGG CACAGTGTTC
  CTTCAGCTGG GACTGGGGCC CTTCCTTCCC CTCTCAGGGA ATCTGGAAAG ATGTTAGAAT
  Y
  GAAGCCTATA ACATTGCTCA TCTGGATTAC CTCACGTTTT TGCCAGTATA TGGTAAGTCA
  AGATTTGCGA TTTCTTGAAA AAAAATTTTT GAGTCTTCTT TTTATTACAA AAAGTCTGTT
  TATAATTTGA AATATAAGTA TATTCTTCAG GATCTTCTTA AAATAATGCA GAATAGCCAA
  TTTATAAAAG TCTGAAATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51651926	NES14651217	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36268797					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51651926	NES14651217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135223735 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Manba	mannosidase, beta A, lysosomal			Coding-Synonymous
				mRNA-UTR
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr585732	regulatory region 585732			424 bp distal
Rr585733	regulatory region 585733			275 bp distal