rs36261880 SNP Detail

Summary

• ID
  rs36261880
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123027556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTACCCAC AAAACCACAA
  ATTAAGCAAA CATTCAAAGG TTTCACGATA GCATTTTAAA ATTGACCCTA AATAAACTAG
  GAAATTATAC AATGTGGTGT GGAGGAGTGT TGGGGAATGA ACTCAGAACC TCCTACAGGT
  TCTGCCATTG ACCTACATCC CCAGCCTCTG ACAAATTAGA TCATTAGAGT GAAGACCTAG
  K
  TGCTTTCGTA ACAATCCTCT AAAGCCATCA ACATACTGCC TGGATATTTT AGGAAAGATG
  ATTTCTGAGG AATGTCCGCT CAGTGTTCTT TCTTGACCCT CACACAGCCT GGTGATTGAG
  AGATTGATGG AAGATGGCCC ACAGGACCCT TCCCTCAGCA ACTGGCTTCA CAGAGTTAAA
  CTAGCCAGTG CATCAGAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51024664	NES13910087	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36261880					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024664	NES13910087	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123027556 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			141 bp proximal
Rr584474	regulatory region 584474			771 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant