rs36260979 SNP Detail

Summary

• ID
  rs36260979
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152179226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATTCTCC TTCATACCAG
  CAGCGTGTCT TATTCCAGCT ACCAGGAACA CCCTGGGCTG GGTGAGCGTT ACATGGAGTT
  GGGGAGCATG GTGGCAAGCA GGAGTCAGGC TGTTAGGGTG AGATTCTGGT GTAACAGAGT
  TTCGAAACCG ACTTCAATAA TCCCTTGCCA CCTTCTGCTT GCACACTGTT CTTCCACTGC
  S
  ACAGTGATCT CCGCCTTCCG CAGCTCCCTA ATTCTTGAGA GATGGATGTA GTGGGAATGG
  GACTTCATGC CTTTAGAGAC GAGGTTAGAG CCTCTTAAGC TTTTCCCACT TGTGAGACCC
  CATCTTGCCT GAGTAATAGC TACATTACTC CTGGTATACA AATAGATAAA ATAACCACAT
  AATTTAAACA TTTGCTAGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51675398	NES14642845	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36260979					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51675398	NES14642845	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152179226 () rs orientation: forward

Symbol	Name	Function Class
Ak5	adenylate kinase 5	Intron
Rr587559	regulatory region 587559	955 bp proximal
Rr587560	regulatory region 587560	1209 bp proximal
Rr587561	regulatory region 587561	1813 bp proximal