rs36260832 SNP Detail

Summary

• ID
  rs36260832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA ATCTGGCCCA TTCTCTTTGC
  Y
  GGTATTTGTT AGTCCAGTTT CCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677572	NES14010815	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		C	T	T	T		T
ss322916258	CHEV_9_40264855	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36260832					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677572	NES14010815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368566 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gramd1b	GRAM domain containing 1B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr676839	regulatory region 676839			1845 bp distal
Rr676840	regulatory region 676840			1016 bp distal
Rr676841	regulatory region 676841			1414 bp distal
Rr676842	regulatory region 676842			1411 bp proximal
Rr676843	regulatory region 676843			1782 bp proximal
Tssr84449	transcription start site region 84449			1949 bp downstream
Tssr84450	transcription start site region 84450			1360 bp downstream
Tssr84451	transcription start site region 84451			385 bp upstream
Tssr84452	transcription start site region 84452			413 bp upstream
Tssr84453	transcription start site region 84453			1154 bp upstream
Tssr88934	transcription start site region 88934			1886 bp upstream
Tssr88935	transcription start site region 88935			1835 bp upstream
Tssr88936	transcription start site region 88936			1814 bp upstream
Tssr88937	transcription start site region 88937			1750 bp upstream
Tssr88938	transcription start site region 88938			1493 bp upstream
Tssr88939	transcription start site region 88939			1458 bp upstream
Tssr88940	transcription start site region 88940			1426 bp upstream
Tssr88941	transcription start site region 88941			1137 bp upstream
Tssr88942	transcription start site region 88942			1122 bp upstream
Tssr88943	transcription start site region 88943			1094 bp upstream
Tssr88944	transcription start site region 88944			1046 bp upstream
Tssr88945	transcription start site region 88945			1029 bp upstream
Tssr88946	transcription start site region 88946			933 bp upstream
Tssr88947	transcription start site region 88947			904 bp upstream
Tssr88948	transcription start site region 88948			874 bp upstream
Tssr88949	transcription start site region 88949			202 bp downstream