rs36257866 SNP Detail

Summary

• ID
  rs36257866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31068658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCAGGCCT GAAAAGGAAG
  AACCCTTCTT TTCTTGTGCA TTTGGTCTCC AGAAAAGCTC CTCCAGCAAG CAGCTCTGCA
  GATTAGGGAC AGAATCAAGC TTCATGCGGT TCTTCTCTCT CTGAACTTGC TCAGCCGCAT
  CCACCCTGGC TCCCATCAGT CTGCCTTCCT CTGGTCCCCG CCAAGCAGGT TGTCTAAGGC
  R
  GCGCTTGGGA GTCTCCCTAG CCTGGGTGTC CTTTCAATCT TCAAGCAAAA AGCATCCCCT
  ATTTCAGTGA CATGATACCT GCACGTGGTC TAGAATGTTC TACATAGAAC CGTCACTGTT
  ACTTGGTAGT GGCCTGCTTA CCTAGGGTGT TCATCTTACT CTCCTCCCTG CCACACTGTA
  ACGGGTCTGT ATTATGTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260315	NES13792635	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36257866					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260315	NES13792635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31068658 () rs orientation: forward

Symbol	Name	Function Class
Lncpint	long non-protein coding RNA, Trp53 induced transcript	1840 bp downstream
Rr627879	regulatory region 627879	578 bp distal
Rr627880	regulatory region 627880	698 bp proximal