rs36256997 SNP Detail

Summary

• ID
  rs36256997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85741433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCTTTT CTTTTCTTTT
  CTTTCCTTTC CTTTTCTTTT CTTTTCTGTC CTTCCTTCCT TCCTTCCTTC CTTCCTTCCT
  TCCTTCCTTC CTTCCTTCCC TTCCTTCCTT CCTTCCTTCC TTCCTTTCTT TCTTTCTTTC
  TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT TTTTGAACAG ATAAGGCTGA GTGTCAACTG
  Y
  GCAGCGAAGG AGACTTCTAT TCTGAGCACA TGCTCTTCTA AGAAATTCTA TTTGGACTTC
  CTGGTTTATA GGCTGAGGGT AGGACCTAAA TTCTCCACCT AAATACTGAG GCTCCACAGA
  ATCAAGAGAA ACGCTGAGCG TGGAGCTTTA AATTGGAGGC AATGCAGACT TGCAATAGAA
  CACATAAGGG TTCATATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51760006	NES14804468	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs36256997					SNP	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51760006	NES14804468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85741433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nat8f3	N-acetyltransferase 8 (GCN5-related) family member 3			Intron
				Noncoding-Transcript-Variant
Rr633260	regulatory region 633260			980 bp distal
Rr633261	regulatory region 633261			510 bp distal
Rr633262	regulatory region 633262			1362 bp proximal
Rr633263	regulatory region 633263			1608 bp proximal