rs36256862 SNP Detail

Summary

• ID
  rs36256862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68626482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCTCTG CTGCACCCTG
  TAGTGTCAAC TGCCATAGCA TGGTACAGTC CCCTTCCCTA CAAGAATTGT CACACACTGA
  ATCCTCCACG CATTTATTAT TTCCCAAGCT TCGTGGTTCT AGAAAATACA CGAGCTCTCT
  CATTTCACCC GTAGGTCCTC CTGCTATTTA AGTTGCTGTT CTAAAGAGCT TGGGGAAACA
  Y
  GAACTTGAAA CTGGGAGATA TGGTTTCAGT GATAGTCCTG GAAAAAAAAA AAAAACGGAT
  CCAGCAGCTG CAACCTTTGC ATCTTGTAAT ACAGTCTCTA CACATGTCCA TTTTATTAAA
  CCAATTATAG GAGCATGCAG AGTGAACCAA TCTTACACAA AACAGGTCCT CTTAAAAGCC
  AGATCTGCAT CCGTGGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51541862	NES14683090	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36256862					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541862	NES14683090	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68626482 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13253	CpG island 13253	1769 bp proximal
Rr397712	regulatory region 397712	1224 bp downstream
Rr578068	regulatory region 578068	1515 bp distal
Rr578069	regulatory region 578069	1601 bp distal
Rr578070	regulatory region 578070	465 bp distal
Rr578071	regulatory region 578071	182 bp proximal
Rr578072	regulatory region 578072	1189 bp proximal
Rr578073	regulatory region 578073	1298 bp proximal