rs36256342 SNP Detail

Summary

• ID
  rs36256342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147159037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGGGTAA TGGGAAGGAG
  GAAAGGGGCT TTGGGTTGGT TGGAAACCTT GAGTTCCCTC TGGAGTTGAT CACCTCAGCC
  ATTTATCACT CCCCATTTTG AGAGAGAAAA ATAAAGTGTC AAACATTTAT GCTAACTTCC
  ACTAGAAGCT CAACCGTTTG CACCACCAGC CTCCTAGGTT GTGTGCCAGC TGACAAGGCT
  S
  ACCACCGAGA GCCCAGAATA AATAAGGAGC TGGTCTCTAC TTCCCCGCAC TGTTCTCAGA
  ATGCACCAGA CTTGTGTGGC TGGCTTTTTG ACATTTCTTT AGAGCAACTT TGGATATTTA
  ACCCCTCATC CACATTCTTG TACCTCATAC ATTTAATTAT AGCAGGATGC ATTGTGGTCC
  CAAAGGACTT CCTTCACATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51047036	NES13892236	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36256342					SNP	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51047036	NES13892236	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147159037 () rs orientation: forward

Symbol	Name	Function Class
Rr587151	regulatory region 587151	972 bp distal
Rr587152	regulatory region 587152	1929 bp proximal