rs36254124 SNP Detail

Summary

• ID
  rs36254124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85270434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTTCCT GCCAAGTCTA
  CCAGACCAGG CCCAACTCAG AAAGGAAGAG GTTCGAGGCA CTGAGGTTCC AGTGTCTGGC
  TGAGCGTTGC CCCGTGACCT GCTGGACCAA CGAGTTAACT GTTGGGTTCA GAAAAGGCAG
  CAAGTACTGC CCACAGTGAA AAAGTTCAAG TTCCACAAGC CACTTGTGCA AGCAGGTCAC
  Y
  GAGAGTCACC CTGGGACCTA CAACCATGCA TGGAAGGCCA GCTGAGCCAC AGTGGCTAGC
  CACCATATGG AGAGTGCAGG CCAGGATCCC TGGCATCCTC ACAGAAGCAC ACAGAGGCAC
  CTCCACTCTG AGCTGCAGCC CCAGGTTGAG AGCTGACCTT CTTTGTCCTC AGCCCAACAT
  CCAGGGCACT TCTGGCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51356141	NES13743939	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36254124					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51356141	NES13743939	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85270434 () rs orientation: forward

Symbol	Name	Function Class
Rr633168	regulatory region 633168	within coordinates
Rr633169	regulatory region 633169	1956 bp proximal
Sfxn5	sideroflexin 5	Intron