rs36254115 SNP Detail

Summary

• ID
  rs36254115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116648012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATG CTGGGGACAG GAGTCCAGAC
  R
  CTGAAAACAG TGAGCCTCTA AAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss51859255	NES14882310	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	A		G	G
ss321918468	CHEV_6_116621069	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs36254115					SNP	A	A	A	A	A	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859255	NES14882310	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116648012 () rs orientation: forward

Symbol	Name	Function Class
Gm67954	predicted gene, 67954	1603 bp upstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	1945 bp distal
Rr637229	regulatory region 637229	1868 bp distal
Rr637230	regulatory region 637230	within coordinates
Rr637231	regulatory region 637231	770 bp distal
Rr637232	regulatory region 637232	188 bp proximal
Rr637233	regulatory region 637233	1202 bp proximal
Rr637234	regulatory region 637234	1614 bp proximal
Tssr58383	transcription start site region 58383	1653 bp downstream
Tssr58384	transcription start site region 58384	1584 bp downstream
Tssr58385	transcription start site region 58385	494 bp upstream
Tssr58386	transcription start site region 58386	743 bp upstream
Tssr62606	transcription start site region 62606	356 bp downstream
Tssr62607	transcription start site region 62607	1388 bp downstream