rs36254029 SNP Detail

Summary

• ID
  rs36254029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8639409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAAGTCT GCTGTCCCAG
  AAGCCTCTCT TCTACTTTTA ACTGAAACTT TCTCTTTTTC CTGCCACAAG GATTCGCCAT
  AGCTTCCCCT GTACTGCCTG GCTCCCCAGA TCACAAACCA ATTCTCCCAA AGCCTGTGGC
  TTCACCGCCC GCCACTGGCA TTTCAGGGCC ACGGACCACA CAAATGGTGG CAGGTGAGTT
  Y
  TGGATGAAGT ACGACCAGCT CTGACATTCA GCAAGCATCA AGCCTGCAAT CCATGAAATG
  GGTTCAGACA TGACCCCTTT CTCAAACAGG AAGGGCAAGG TAGAAAGTGG GGCCCTGTGG
  CTCTGTCCTG TGGCTCTGTC CTGTGGCTCT GTCCTGCGGT TCTGACCCTG TGGCTCTGTC
  CTGCGGTTCT GTCCTGCGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50810538	NES14204866	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36254029					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810538	NES14204866	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8639409 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	626 bp downstream
Rr427376	regulatory region 427376	314 bp distal
Rr427377	regulatory region 427377	120 bp distal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	1249 bp upstream
Tssr96640	transcription start site region 96640	1386 bp upstream
Tssr96641	transcription start site region 96641	1362 bp upstream
Tssr96642	transcription start site region 96642	1331 bp upstream
Tssr96643	transcription start site region 96643	1275 bp upstream
Tssr96644	transcription start site region 96644	1179 bp upstream
Tssr96645	transcription start site region 96645	1029 bp upstream