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rs36252684 SNP Detail
Summary
  • ID
    rs36252684
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:127740960 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATAAACAGT GTTTCAGGGC
    TTCTCTCCTT CACTGAAGGG CTAGCGAAAG AATTCTGGGA AGTCTTCCTC TCTAGAGGGT
    TCAGTGCCAA TGGCCTTTGA GTATAAACAG TACTAAGTTT AGAATTTGTG TATATCTCAA
    CTTAACCTCA GCTCATGGTT ATCACAACAA AGAACTCCGA TACATGGTTT CTACTCCTTA
    S
    AACTCTCCAT AGCTTTGAAT GTTACATCCT GCCTATCTTC GTGAAGTATA TACCAAAAGA
    GAAGAGGGCT TACAATGAAC AAGTTATGCA CACGAAGCAG ATGCTGTCAT TTCTGTTTGT
    AATGAGAGGC ATTTTTGTTT GACTGTAGAG AGGTTTTTTA AAAATTATTT TAATATATGA
    AATTGTAAGG AAAAAAATTA                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51616847 NES14661536 PERLEGEN MM_PANEL2 f SNP G G G G G G C G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36252684 SNP G G G G G G C G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51616847 NES14661536 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:127740960 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
9830132P13Rik RIKEN cDNA 9830132P13 gene within coordinates
Rr398010 regulatory region 398010 1710 bp upstream
Rr584909 regulatory region 584909 1123 bp proximal
Rr584910 regulatory region 584910 1562 bp proximal
Rr584911 regulatory region 584911 1789 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory