rs36251810 SNP Detail

Summary

• ID
  rs36251810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113069100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGCCCAC ACAAAACTAT
  ATGGGAGCTC TGAAATTGTA TAGACTTTAA TTCATGTTCT GGTGCTTCTG TTAATGTGTG
  TGCACACGTT AATAAAATAA AAAATCAGGT ACTTGAAGGC AAGAAGGTGG TGCAGGATCT
  CCTAGAGATG GAATTAAGTA TTTGTGAGCA GTCCAACATT TGTGCTGGGA ATTGAACTTA
  Y
  TTCTTTTGCA AGAGCAGTAT GCACTCTATT AACTGCTGAG CCATCTCTTC AGACCCAGAT
  TCTAGTTTGT TTTTTTCCAA GACAGGATTT CTCTGTGTAT CCTTGGCTGT CCTGAAACTC
  AGAGATCCAC CTGCCTCTGC CTCCCAAGAG CTGAGATTAA AGGCGTGCGC CACCACTGCC
  CAGCCTGATT CAAGTGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51843788	NES14765764	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36251810					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843788	NES14765764	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113069100 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636457	regulatory region 636457			884 bp proximal
Rr636458	regulatory region 636458			922 bp proximal
Setd5	SET domain containing 5			Intron
				Noncoding-Transcript-Variant