rs36251548 SNP Detail

Summary

• ID
  rs36251548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108814630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCATTT CTCATTCAAA
  CCACTATATG CACCTTCTAG CCTCTATGTC TCTCTCTCTC CCAGAAATCA GGTCACACCT
  TCCTGCCACC TTTTCTCTCT TGGACAGAGT TTAAAAAAAC AAAAACAAAA CGGATACTGT
  ACCTCTCAGT GGCTTCTCCT CCTGCAGCTA GCTGCAAGAT AAGTTTATGC TCCTCCTAAG
  Y
  GCCTGTCTCT GTGCCTGTAC ATAGACCAGA CTACGCTAAA TTATGAAGTA TGAAGCTTGC
  CCCAAACCCT AAGAGCCTTT AAGAATCAGC ACTTGTGCTT GTTTTCTGCA ACTTCATGGT
  CCAGTCTCTC CTTTGAGGAC CCCGTCCTTC TCTGCACACG CATCTCTCTC TCCTAACTGC
  ACTCTCACTT TAAATCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51808901	NES14771191	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36251548					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51808901	NES14771191	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108814630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368139	regulatory region 368139			1543 bp downstream
Rr368140	regulatory region 368140			1295 bp downstream
Rr368141	regulatory region 368141			1912 bp upstream
Rr636220	regulatory region 636220			797 bp distal
Rr636221	regulatory region 636221			352 bp proximal
Rr636222	regulatory region 636222			1650 bp proximal
Tssr58109	transcription start site region 58109			1568 bp downstream
Tssr58110	transcription start site region 58110			1397 bp downstream
Tssr58111	transcription start site region 58111			1355 bp downstream
Tssr58112	transcription start site region 58112			1332 bp downstream
Tssr58113	transcription start site region 58113			1313 bp downstream
Tssr58114	transcription start site region 58114			1299 bp downstream
Tssr58115	transcription start site region 58115			1262 bp downstream
Tssr58116	transcription start site region 58116			1036 bp downstream
Tssr58117	transcription start site region 58117			1017 bp downstream
Tssr58118	transcription start site region 58118			971 bp downstream
Tssr58119	transcription start site region 58119			930 bp downstream
Tssr58120	transcription start site region 58120			1544 bp upstream