rs36250930 SNP Detail

Summary

• ID
  rs36250930
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113697013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAGCTT ACCTGGAATG
  CCTGGGGATG TGGTGCCTGC TCACCGGCTT CTCCTTATAT AGGAAGCCTT GTGTTTGTTC
  ACATCCGGTA GCCTCATCTC TTGAGGCTGT GTAGTTTGTG TGGGCAGTAT TGCATTCCTT
  GGGAACTAAG TACTCTTTTT TTCCCCTCAC TGTTGAAGAA CAAACAGTGG AGGACAGGTG
  S
  CAAAGTCGGG ACAGTTGGCT TGGGTGGGGC ACCAGCTCCT GATTCTCCAT GGTCCCTGTG
  TGGGCTTGGC CCTGGTGGTG GATTGGCAGC TGAGCTCTGA GGTCTTGCTT AGTTGTGGTA
  TAACCTTGGC TTGCCTCCTT CCATGTGAGA TGATGTTGCC ACCAGGAGAA CTTGTCCAAT
  TTTGGACAAA ATTGGACAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51839637	NES14764967	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36250930					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839637	NES14764967	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113697013 () rs orientation: forward

Symbol	Name	Function Class
D6Oda23	DNA segment, Chr 6, Sen-ichi Oda 23	1936 bp distal
Ghrl	ghrelin	172 bp upstream
Gm44033	predicted gene, 44033	774 bp downstream
Rr636588	regulatory region 636588	1056 bp proximal
Tssr62470	transcription start site region 62470	584 bp upstream
Tssr62471	transcription start site region 62471	169 bp upstream