rs36245997 SNP Detail

Summary

• ID
  rs36245997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31105567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAACTG TCCTCTCAGC
  TGATCTAGCT TTGTTTAATG TTACCAGTAT TTTGCCTAAT AGTAAAATTT AGCTGTGTAT
  CAGAACAGAG ATTCTCATAT TCCATGTTAG CACTGAAACC TGTTTCATTC CCCAAATAAC
  ACTAGGTGAC GGCTGATGCA CACTCTAAAT GGCAGCAGGA CACCGGGTTG ATGTGGTGTC
  Y
  CAGGAGCCTC GGCATTTCCG GCTTACTCCT GTTGAAGCAT CACATTTTGG AGATGGTACA
  AATACTATTG CTACTTCTTT AAACCCTATC AATGTATTCT GTGTATGCTG TCATTGTCTC
  AGACTGAGGC ATACCCGAGC TGATTTCTTT TTTTTTTTTT TTTTTTTTTT AAAAGTCATG
  TCAGGCCAAA TCTCACACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51259925	NES13793787	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36245997					SNP	C	C	C	C	C	C	C	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51259925	NES13793787	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31105567 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr399602	regulatory region 399602	1884 bp downstream
Rr627897	regulatory region 627897	1621 bp distal
Rr627899	regulatory region 627899	429 bp proximal
Tssr55453	transcription start site region 55453	1890 bp downstream
Tssr60162	transcription start site region 60162	1902 bp upstream