rs36245891 SNP Detail

Summary

• ID
  rs36245891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31104225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATGCCT CTGTGGGGCC
  CAAGAGTGTG CCCCTCATCC AAGCATCCTG GGTCTTTATC CTGCACTTTA CCATTTAGGG
  CCATTTGCCT GTCTAGAGAA CTAACACTGC TGACCGCAGA CACCATTGGG TGATTTCTCT
  CTGACTCTAG TCATCAGGAC AACCCCACGT AGAGCATCTG TAACTTTTGT GAAAGGAGAG
  Y
  CAGGTTGAGT TGCCTGTGCC TGCCCTCCCC CCAACCCCCA CCTCCATGCT AGAGGGGTAA
  AATCCAAGCT GACAAATGCC GGAGGAAGAG CAGTCAGTGT TTGAGACTGA ATCCAAACAT
  TATGTCAGAG CAGTGGTTCC CAACCTTCCT AATGCTGCGG CCCTTTAATA CTGTTCTTCA
  TGTTGTGCTG ACCCCCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51259941	NES13793820	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36245891					SNP	T	T	T	T	T	T	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51259941	NES13793820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31104225 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr399601	regulatory region 399601	1744 bp downstream
Rr399602	regulatory region 399602	542 bp downstream
Rr627894	regulatory region 627894	1892 bp distal
Rr627895	regulatory region 627895	1490 bp distal
Rr627896	regulatory region 627896	798 bp distal
Rr627897	regulatory region 627897	279 bp distal
Rr627898	regulatory region 627898	708 bp distal
Rr627899	regulatory region 627899	1771 bp proximal
Tssr55453	transcription start site region 55453	548 bp downstream
Tssr60158	transcription start site region 60158	949 bp upstream
Tssr60159	transcription start site region 60159	787 bp upstream
Tssr60160	transcription start site region 60160	753 bp upstream
Tssr60161	transcription start site region 60161	729 bp upstream
Tssr60162	transcription start site region 60162	560 bp upstream