rs36243641 SNP Detail

Summary

• ID
  rs36243641
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:96454894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGAGGGC TGCTTTCTGA
  ACGCACGTAA CATAGAGTAA TTTTTAAAAA GTTTTTATTT TTAACATTTT TATATTTATC
  TTGATGATTT AAAGAAGAGT TTTAAAATAT TTTCTTTAAA TTTTGTGGAC GTCTTGACTG
  TGAGTTTTTG GATGTGAATG TAATTCCGCT GGGGGCCAGC AGAGGTCACT GGTTGGATGC
  K
  GGAACAACAC AGTTGTCTAT GCGAACACAA CTCCTGTCTT CTGCCCGAGC AGCAATACTC
  TTAATCCCTG AACCGTCTCT CCAACTCCAC GCAACGTAAT TCTTAACTAC ATTGCATCTC
  ATTTGGGAGT GAGACATTTC TACCTTGGCT TGAACACATA ATCTCCATCT TCAGCCGTCC
  TCCCCAGTCC CCCCTCAGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50995760	NES13927731	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36243641					SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50995760	NES13927731	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96454894 () rs orientation: forward

Symbol	Name	Function Class
Rr397861	regulatory region 397861	within coordinates
Rr581313	regulatory region 581313	1802 bp distal
Rr581314	regulatory region 581314	within coordinates
Rr581315	regulatory region 581315	8 bp distal
Rr581316	regulatory region 581316	1854 bp proximal