rs36241001 SNP Detail

Summary

• ID
  rs36241001
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:79998594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGAAGT AAGATTTTTA
  ATTGTTAAAA TGTGGTCTTA AATGTCCTAT ACGGTTCTTA CCTTAAGACA GGACATCCCT
  GCTCTGGGTG AGCCAGGGGT ACCAATAGTG ACTGTCAGTG TGACACCCCT AATCTGGACG
  AGCCTGTGGT GCTGTGTGGC TTCTGTTTGA CAGGGTGCAT CTGTGTTCTC TTTGCTCTTG
  W
  AGGTTTCCGT CTAATCACGC AGCTGAAAGG CATGAGTGTG TTTCTGGTGC TATTTCCCAC
  CCTGCTGCTG GTTATGCTGA CGGGGGCTCA GAGAGCTTGC CCAAAGAACT GCAGATGCGA
  TGGCAAGATT GTATACTGTG AGTCTCACGC CTTCGCAGAC ATCCCTGAGA ACATTTCTGG
  AGGGTCACAA GGTTTATCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51705480	NES14809932	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36241001					SNP	T	T	T	T	T	T	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51705480	NES14809932	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79998594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17566	CpG island 17566			1243 bp proximal
Gm4409	predicted gene 4409			within coordinates
Lrrtm4	leucine rich repeat transmembrane neuronal 4			Intron
				Splice-Site
Rr632528	regulatory region 632528			1958 bp distal
Rr632529	regulatory region 632529			1333 bp distal